Package: concatipede 1.0.1

concatipede: Easy Concatenation of Fasta Sequences

Concatenation of multiple sequence alignments based on a correspondence table that can be edited in Excel <doi:10.5281/zenodo.5130603>.

Authors:Matteo Vecchi [aut, cre], Mattieu Bruneaux [aut]

concatipede_1.0.1.tar.gz
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concatipede.pdf |concatipede.html✨
concatipede/json (API)
NEWS

# Install 'concatipede' in R:
install.packages('concatipede', repos = c('https://tardipede.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tardipede/concatipede/issues

Pkgdown site:https://tardipede.github.io

On CRAN:

Conda:

3.70 score 5 scripts 192 downloads 13 exports 37 dependencies

Last updated 3 years agofrom:324e787c89. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 27 2025
R-4.5-winOKMar 27 2025
R-4.5-macOKMar 27 2025
R-4.5-linuxOKMar 27 2025
R-4.4-winOKMar 27 2025
R-4.4-macOKMar 27 2025
R-4.4-linuxOKMar 27 2025
R-4.3-winOKMar 27 2025
R-4.3-macOKMar 27 2025

Exports:%>%auto_match_seqsconcatipedeconcatipede_exampleconcatipede_preparefind_fastaget_genbank_tableread_xlrename_sequenceswrite_fastawrite_nexuswrite_phylipwrite_xl

Dependencies:apecellrangerclicpp11crayondigestdplyrfansigenericsgluehmsigraphKernSmoothlatticelifecyclemagrittrMatrixnlmepillarpkgconfigprettyunitsprogressqualVR6Rcppreadxlrematchrlangstringdiststringistringrtibbletidyselectutf8vctrswithrwritexl

Example of package usage

Rendered fromPackage-usage.Rmdusingknitr::rmarkdownon Mar 27 2025.

Last update: 2021-08-05
Started: 2021-03-11